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Centre for Pathogen Evolution

 

For queries relating to publications, please contact: CPEadmin@zoo.cam.ac.uk

  • Rössler, Annika; Netzl, Antonia; Knabl, Ludwig; Schäfer, Helena; Wilks, Samuel H.; Bante, David; Falkensammer, Barbara; Borena, Wegene; von Laer, Dorothee; Smith, Derek J.; Kimpel, Janine (2022). BA.2 and BA.5 omicron differ immunologically from both BA.1 omicron and pre-omicron variants. Nature Communications, 13(1), 7701. doi:10.1038/s41467-022-35312-3

  • Rosu, M. E., Lexmond, P., Bestebroer, T. M., Hauser, B. M., Smith, D. J., Herfst, S., & Fouchier, R. A. M. (2022). Substitutions near the HA receptor binding site explain the origin and major antigenic change of the B/Victoria and B/Yamagata lineages. Proceedings of the National Academy of Sciences, 119(42). doi:10.1073/pnas.2211616119

  • Liu, Yang; Liu, Jianying; Zou, Jing; Kalveram, Birte; Machado, Rafael R. G.; Ren, Ping; Türeli, Sina; Smith, Derek J.; Weaver, Scott C.; Xie, Xuping; Shi, Pei-Yong (2022). Cross-neutralization and cross-protection among SARS-CoV-2 viruses bearing different variant spikes. Signal Transduction and Targeted Therapy, 7(1), 285. doi:10.1038/s41392-022-01137-1

  • Angela R. Branche, Nadine G. Rouphael, David J. Diemert, Ann R. Falsey, Cecilia Losada, Lindsey R. Baden, Sharon E. Frey, Jennifer A. Whitaker, Susan J. Little, Evan J. Anderson, Emmanuel B. Walter, Richard M. Novak, Richard Rupp, Lisa A. Jackson, Tara M. Babu, Angelica C. Kottkamp, Anne F. Luetkemeyer, Lilly C. Immergluck, Rachel M. Presti, Martín Bäcker, Patricia L. Winokur, Siham M. Mahgoub, Paul A. Goepfert, Dahlene N. Fusco, Elissa Malkin, Jeffrey M. Bethony, Edward E. Walsh, Daniel S. Graciaa, Hady Samaha, Amy C. Sherman, Stephen R. Walsh, Getahun Abate, Zacharoula Oikonomopoulou, Hana M. El Sahly, Thomas C.S. Martin, Christina A. Rostad, Michael J. Smith, Benjamin G. Ladner, Laura Porterfield, Maya Dunstan, Anna Wald, Tamia Davis, Robert L. Atmar, Mark J. Mulligan, Kirsten E. Lyke, Christine M. Posavad, Megan A. Meagher, David S. Stephens, Kathleen M. Neuzil, Kuleni Abebe, Heather Hill, Jim Albert, Teri C. Lewis, Lisa A. Giebeig, Amanda Eaton, Antonia Netzl, Samuel H. Wilks, Sina Türeli, Mamodikoe Makhene, Sonja Crandon, Marina Lee, Seema U. Nayak, David C. Montefiori, Mat Makowski, Derek J. Smith, Paul C. Roberts, John H. Beigel, the COVAIL Study Group. SARS-CoV-2 Variant Vaccine Boosters Trial: Preliminary Analyses. medRxiv. 2022.07.12.22277336. doi:10.1101/2022.07.12.22277336

  • Huang, Angkana T.; Salje, Henrik; Escoto, Ana Coello; Chowdhury, Nayeem; Chávez, Christian; Garcia-Carreras, Bernardo; Rutvisuttinunt, Wiriya; Maljkovic Berry, Irina; Gromowski, Gregory D.; Wang, Lin; Klungthong, Chonticha; Thaisomboonsuk, Butsaya; Nisalak, Ananda; Trimmer-Smith, Luke M.; Rodriguez-Barraquer, Isabel; Ellison, Damon W.; Jones, Anthony R.; Fernandez, Stefan; Thomas, Stephen J.; Smith, Derek J.; Jarman, Richard; Whitehead, Stephen S.; Cummings, Derek A. T.; Katzelnick, Leah C. Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand. Lowen AC, ed. PLOS Pathog. 2022;18(5):e1010500. doi:10.1371/journal.ppat.1010500

  • Marciela M DeGrace, Elodie Ghedin, Matthew B Frieman, Florian Kramer… Sarah L James, Terry C Jones, Eric B LeGresley, Barbara Mühlemann, Antonia Netzl, Sina Türeli, Samuel A Turner, Samuel H Wilks...(+121)… Derek J Smith (co-corresponding), Michael S Diamond, Diane J Post, Mehul S Suthar. Defining the risk of SARS-CoV-2 variants on immune protection. Nature. March 2022. doi:10.1038/s41586-022-04690-5.

  • Anna Z Mykytyn, Melanie Rissmann, Adinda Kok, Miruna E Rosu, Debby Schipper, Tim I Breugem, Petra B van den Doel, Felicity Chandler, Theo Bestebroer, Maurice de Wit, Martin E van Royen, Richard Molenkamp, Bas B Oude Munnink, Rory D de Vries, Corine GeurtsvanKessel, Derek J Smith, Marion P G Koopmans, Barry Rockx, Mart M Lamers, Ron Fouchier, Bart L Haagmans. Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct. Sci Immunol. June 2022. doi:10.1126/sciimmunol.abq4450

  • Maria Auladell, Hoang Vu Mai Phuong, Le Thi Quynh Mai, Yeu-Yang Tseng, Louise Carolan, Sam Wilks, Pham Quang Thai, David Price, Nguyen Thanh Duong, Nguyen Le Khang Hang, Le Thi Thanh, Nguyen Thi Hong Thuong, Tran Thi Kieu Huong, Nguyen Thi Ngoc Diep, Vu Thi Ngoc Bich, Arseniy Khvorov, Luca Hensen, Tran Nhu Duong, Katherine Kedzierska, Dang Duc Anh, Heiman Wertheim, Scott D.Boyd, Kim L.Good-Jacobson, Derek Smith, Ian Barr, Sheena Sullivan, H. Rogier van Doorn, Annette Fox. Influenza virus infection history shapes antibody responses to influenza vaccination. Nat Med. 2022;28(2):363-372. doi:10.1038/s41591-022-01690-w

  • Baoling Ying, Bradley Whitener, Laura A. VanBlargan, Ahmed O. Hassan, Swathi Shrihari, Chieh-Yu Liang, Courtney E. Karl, Samantha Mackin, Rita E. Chen, Natasha M.Kafai, Samuel H. Wilks, Derek J. Smith, Juan Manuel Carreño, Gagandeep Singh, Florian Krammer, Andrea Carfi, Sayda M. Elbashir, Darin K. Edwards, Larissa B. Thackray. Michael S Diamond. Protective activity of mRNA vaccines against ancestral and variant SARS-CoV-2 strains. Sci Transl Med. 2022;14(630). doi:10.1126/scitranslmed.abm3302

  • Antonia Netzl, Sina Türeli, Eric B LeGresley, Barbara Mühlemann, Samuel H Wilks, Derek J Smith. Analysis of SARS-CoV-2 Omicron Neutralization Data up to 2021-12-22. bioRxiv. January 2022:2021.12.31.474032. doi:10.1101/2021.12.31.474032

  • Samuel H Wilks, Barbara Mühlemann, Xiaoying Shen, Sina Türeli, Eric B LeGresley, Antonia Netzl, Miguela A Caniza, Jesus N Chacaltana-Huarcaya, Xiaoju Daniell, Michael B Datto, Thomas N Denny, Christian Drosten, Ron A M Fouchier, Patricia J Garcia, Peter J Halfmann, Agatha Jassem, Terry C Jones, Yoshihiro Kawaoka, Florian Krammer, Charlene McDanal, Rolando Pajon, Viviana Simon, Melissa Stockwell, Haili Tang, Harm van Bakel, Richard Webby, David C Montefiori, Derek J Smith. Mapping SARS-CoV-2 antigenic relationships and serological responses. bioRxiv. 2022.01.28.477987. doi:10.1101/2022.01.28.477987