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2014 Publications

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  • Nicola S. Lewis, Tavis K. Anderson, Pravina Kitikoon, Eugene Skepner, David F. Burke and Amy L. Vincent (2014). Substitutions near the Hemagglutinin Receptor-Binding Site Determine the Antigenic Evolution of Influenza A H3N2 Viruses in U.S. Swine. Journal of Virology, 88(9):4752-4763. doi:10.1128/JVI.03805-13
  • Changwen Ke, Jing Lu, Jie Wu, Dawei Guan, Lirong Zou, Tie Song, Lina Yi, Xianqiao Zeng, Lijun Liang, Hanzhong Ni, Min Kang, Xin Zhang, Haojie Zhong, Jianfeng He, Jinyan Lin, Derek Smith, David Burke, Ron A.M. Fouchier, Marion Koopmans, and Yonghui Zhang (2014) Circulation of Reassortant Influenza A(H7N9) Viruses in Poultry and Humans, Guangdong Province, China, 2013. Emerging Infectious Diseases, 20(12):2034-2040. doi:10.3201/eid2012.140765
  • Philippe Lemey, Andrew Rambaut, Trevor Bedford, Nuno Faria, Filip Bielejec, Guy Baele, Colin A. Russell, Derek J. Smith, Oliver G. Pybus, Dirk Brockmann, Marc A. Suchard (2014). Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2. Ferguson NM, ed. PLOS Pathogens10(2):e1003932. doi:10.1371/journal.ppat.1003932
  • Bernadette G. van den Hoogen, Sander van Boheemen, Jonneke de Rijck, Stefan van Nieuwkoop, Derek J. Smith, Brigitta Laksono, Alexander Gultyaev, Albert D. M. E. Osterhaus, Ron A. M. Fouchier (2014). Excessive production and extreme editing of human metapneumovirus defective interfering RNA is associated with type I IFN induction. Journal of General Virology95(8):1625-1633. doi:10.1099/vir.0.066100-0
  •  A. B. Ludi, D. L. Horton, Y. Li, M. Mahapatra, D. P. King, N. J. Knowles, C. A. Russell, D. J. Paton, J. L. N. Wood, D. J. Smith, J. M. Hammond (2014). Antigenic variation of foot-and-mouth disease virus serotype A. Journal of General Virology95(2):384-392. doi:10.1099/vir.0.057521-0
  • Kim B. Westgeest, Colin A. Russell, Xudong Lind, Monique I. J. Spronken, Theo M. Bestebroer, Justin Bahl, Ruud van Beek, Eugene Skepner, Rebecca A. Halpin, Jan C. de Jong, Guus F. Rimmelzwaan, Albert D. M. E. Osterhaus, Derek J. Smith, David E. Wentworth, Ron A. M. Fouchier and Miranda de Graaf (2014). Genomewide Analysis of Reassortment and Evolution of Human Influenza A(H3N2) Viruses Circulating between 1968 and 2011. Journal of Virology88(5):2844-2857. doi:10.1128/JVI.02163-13
  • Trevor Bedford, Marc A Suchard, Philippe Lemey, Gytis Dudas, Victoria Gregory, Alan J Hay, John W McCauley, Colin A Russell, Derek J Smith, Andrew Rambaut (2014). Integrating influenza antigenic dynamics with molecular evolution. eLife3. doi:10.7554/eLife.01914
  • Björn F. Koel, Stefan van der Vliet, David F. Burke, Theo M. Bestebroer, Eny E. Bharoto, I. Wayan W. Yasa, Inna Herliana, Brigitta M. Laksono, Kemin Xu, Eugene Skepner, Colin A. Russell, Guus F. Rimmelzwaan, Daniel R. Perez, Albert D. M. E. Osterhaus, Derek J. Smith, Teguh Y. Prajitno, Ron A. M. Fouchier (2014). Antigenic Variation of Clade 2.1 H5N1 Virus Is Determined by a Few Amino Acid Substitutions Immediately Adjacent to the Receptor Binding Site. mBio5(3):e01070-14-e01070-14. doi:10.1128/mBio.01070-14
  • Tokiko Watanabe, Gongxun Zhong, Colin A. Russell, Noriko Nakajima, Masato Hatta, Anthony Hanson, Ryan McBride, David F. Burke, Kenta Takahashi, Satoshi Fukuyama, Yuriko Tomita, Eileen A. Maher, Shinji Watanabe, Masaki Imai, Gabriele Neumann, Hideki Hasegawa, James C. Paulson, Derek J. Smith, Yoshihiro Kawaoka (2014). Circulating Avian Influenza Viruses Closely Related to the 1918 Virus Have Pandemic Potential. Cell Host & Microbe15(6):692-705. doi:10.1016/j.chom.2014.05.006
  • Ian G. Barr, Colin Russell, Terry G. Besselaar, Nancy J. Cox, Rod S.Daniels, Ruben Donis, Othmar G.Engelhardt, Gary Grohmann, Shigeyuki Itamura, Anne Kelso, John McCauley, Takato Odagiri, Stacey Schultz-Cherry, Yuelong Shu, Derek Smith, Masato Tashiro, Dayan Wang, Richard Webby, Wenqing Zhang (2014). WHO recommendations for the viruses used in the 2013–2014 Northern Hemisphere influenza vaccine: Epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from October 2012 to January 2013. Vaccine, 32(37):4713-4725. doi:10.1016/j.vaccine.2014.02.014
  • David F. Burke , Derek J. Smith (2014). A Recommended Numbering Scheme for Influenza A HA Subtypes. Digard P, ed. PLoS One9(11):e112302. doi:10.1371/journal.pone.0112302
  • J. M. Fonville, S. H. Wilks, S. L. James, A. Fox, M. Ventresca, M. Aban, L. Xue, T. C. Jones, Le N. M. H., Pham Q. T., Tran N. D., Y. Wong, A. Mosterin, L. C. Katzelnick, D. Labonte, Le T. T., G. van der Net, E. Skepner, C. A. Russell, T. D. Kaplan, G. F. Rimmelzwaan, N. Masurel, J. C. de Jong, A. Palache, W. E. P. Beyer, Le Q. M., Nguyen T. H., H. F. L. Wertheim, A. C. Hurt, A. D. M. E. Osterhaus, I. G. Barr, R. A. M. Fouchier, P. W. Horby, D. J. Smith (2014). Antibody landscapes after influenza virus infection or vaccination. Science346(6212):996-1000. doi:10.1126/science.1256427
  • S. Schultz-Cherry, R. J. Webby, R. G. Webster, A. Kelso, I. G. Barr, J. W. McCauley, R. S. Daniels, D. Wang, Y. Shu, E. Nobusawa, S. Itamura, M. Tashiro, Y. Harada, S. Watanabe, T. Odagiri, Z. Ye, G. Grohmann, R. Harvey, O. Engelhardt, D. Smith, K. Hamilton, F. Claes, G. Dauphin (2014). Influenza Gain-of-Function Experiments: Their Role in Vaccine Virus Recommendation and Pandemic Preparedness. mBio5(6):e02430-14. doi:10.1128/mBio.02430-14
  • Martin Gilbert , Björn F. Koel, Theo M. Bestebroer, Nicola S. Lewis, Derek J. Smith, Ron A. M. Fouchier (2014). Serological Evidence for Non-Lethal Exposures of Mongolian Wild Birds to Highly Pathogenic Avian Influenza H5N1 Virus. Eugenin EA, ed. PLoS One, 9(12):e113569. doi:10.1371/journal.pone.0113569